BioDeg

About BioDeg

BioDeg is an open-source software written in FreeFEM (a domain-specific language for finite element programming), C++, and Python for modeling the degradation of metallic biomaterials and simulating the biodegradation behavior of metallic medical devices and implants in corrosion experiments. It can handle any geometry of desire and supports parallel computing to simulate large-scale models.

Download BioDeg

BioDeg is available on GitHub, where you can find the source codes, prebuilt binaries (for Windows and Linux), and development histories.
The core computational model is being maintained/developed in this repository.

Publications

BioDeg is reviewed and published in the Journal of Open Source Software. You can check out the article here.

You can read more about the theories behind BioDeg in the following papers (which we kindly ask you to cite if you use it for your research).

  • M. Barzegari, D. Mei, S.V. Lamaka, L. Geris (2021). “Computational modeling of degradation process of biodegradable magnesium biomaterials”, Corrosion Science, 190, 109674, DOI: 10.1016/j.corsci.2021.109674
  • M. Barzegari and L. Geris (2022). “Highly scalable numerical simulation of coupled reaction–diffusion systems with moving interfaces”, The International Journal of High Performance Computing Applications, 36:2, 198-213, DOI: 10.1177/10943420211045939